Disc 1
01 From the End -The 3rd Birthday- 3:39
02 The Babel : Genesis 2:52
03 Investigation of the Past 5:04
04 Beginning of Breeding 3:51
05 Joy to the World -for The 3rd Birthday- 2:50
06 Flashback 0:31
07 Dive into Myself 3:15
08 Wait for the Combustion 2:02
09 Brave New World 1:31
10 Contact, Freeze, Explode 2:28
11 Unknown Unknown 2:12
12 Equinox of Insanity 2:20
13 Insanity of the Enraged 3:11
14 Reaper 2:33
15 Moment of Humanity 2:18
16 Bloody Black 3:29
17 Frozen Time 1:22
18 The Boss 2:42
19 Arriving Home 2:07
20 Angel's Time 1:57
21 Dive into Myself -Deep Inside- 2:24
22 dayDreamer 2:34
23 Light of Time 2:01

Disc 2
01 Memory II -for The 3rd Birthday- 2:02
02 Ruin 2:12
03 Arise within You -for The 3rd Birthday- 3:20
04 Moment of Silence 2:04
05 Time of Insanity 2:16
06 Queen 3:45
07 Cloud of Aureolin 4:16
08 Girl in the Dream 1:19
09 Unforgettable Man 2:14
10 Out of Phase -for The 3rd Birthday- 2:06
11 Dive into the Cause 2:33
12 Pain of Assault 2:42
13 Human seeker 2:02
14 Human seeker -Battle Side- 2:34
15 Uncontrol 2:46
16 Monodrama 2:55
17 Crossing Time, Crossing Mind 2:51
18 Dr.Maeda (or How I Learned to Start Loving DNA) 2:43
19 End of the Investigation 0:28
20 Worm 2:23
21 Fright Night 2:40
22 Desperation 2:29
23 Ray of Hope 2:13
24 Triumph of Wing 2:20
25 Cityscapes 2:41
26 Crimson Eyes 2:46
27 Unforgettable Man -Return to Me- 1:39

Disc 3
01 King of Closing Time 2:39
02 A Piece of Remain -for The 3rd Birthday- 2:29
03 The Way Things Are 2:09
04 Into the Babel 6:31
05 Escape from UB -for The 3rd Birthday- 2:42
06 Terminus Zero 4:27
07 Immortality of Time 3:46
08 Blue of the End 3:02
09 Dive into Myself -Changing to...- 3:10
10 "Wachet auf, ruft uns der Zeitpunkt Null ※""Based on a cantata BWV140 by J.S. Bach"" 1:11
11 The End -Back to the Beginning- 9:43
12 Come Again to Christmas 2:39
13 Screaming 0:12
14 Primal Eyes -for The 3rd Birthday- 2:24
15 Brea the Brave 3:02
16 Theme of Aya -The 3rd Birthday Early Essence Arrange- 1:14

Disc 1
01 Forbidden Power (Theme for Aya) 2:05
02 MIST 3:52
03 Aya Again 2:30
04 Don't Move! 0:40
05 Nightmare in the Battlefield 1:20
06 Deadly Calm 1:03
07 The First Encounter 1:44
08 Tower Rendezvous 1:51
09 Metamorphosis 2:19
10 Watch Out! 3:47
11 Ambush! 2:08
12 What the Hell Happened? 3:03
13 Do Something! 1:27
14 Weird Man 2:31
15 Return to the Base 1:42
16 Ghost Town 3:09
17 Hunt in Dryfield 2:15
18 Don't Shoot! 0:34
19 Douglas' Blues 3:19
20 Water Tower 1:56
21 Hiding Place 4:54
22 Dryfield 1:13
23 The Bottom of the Well 2:17
24 Stealth Assault 2:18
25 Heaven-sent Killer 2:22
26 The Depth of Aya's Memory 0:54
27 From Dusk Till Dawn 1:49
28 Vagrants 1:57
29 Dark Field 4:46
30 Gigantic Burner 2:14
31 Douglas' Grief 4:06

Disc 2
01 Voice of Mitochondria 2:30
02 Pick Up the Gauntlet 2:53
03 Abandoned Mine 3:56
04 Into the Shelter 1:55
05 Wipe Out the Creatures 2:33
06 Hold Your Breath 1:48
07 Crawling Waste Emperor 3:33
08 Chase 1:29
09 A Sigh of Relief 0:51
10 Passing Through the Sewer, You'll Find... 1:48
11 Battle on the Waterside 1:13
12 Inner Part of the Shelter 2:07
13 Innermost Part of the Shelter 2:03
14 Negative Heritage 1:10
15 Man Made Nature 0:57
16 Ark 1:43
17 Fool's Paradise 1:31
18 Mitochondria Reactor 1:11
19 Mental Deranger 0:51
20 Stalker 1:23
21 Cruelty of Eve's Fate 1:16
22 Killing Field 1:06
23 Golem Soldiers 2:57
24 Prestige of the Nation 1:37
25 Intrusion 5:11
26 Brace Yourself 2:38
27 Brahman 3:21
28 Distorted Evolution 3:12
29 Logic of the Superpower 1:16
30 Aya's Diary 1:37
31 Epilogue 1:04
32 Gentle Rays 3:52
33 Weird Man - Delete-core Mix 5:11
34 Hiding Place - Comfortable Mix 5:08
35 OMAKE 0:05

Disc 1
01 Primal Eyes 2:21
02 Waiting for Something Awakens 1:12
03 Overture [from opera "La mia verita"] 2:17
04 Se Il mio amore sta vincino [Vocalise] -Eva's Aria- 2:07
05 Memory I 0:36
06 Gloom and Doom 2:41
07 Theme of Mitochondoria 1:39
08 Sotto Voce 2:07
09 Arise within You 2:05
10 Main Theme [Piano Solo Version] 2:07
11 The Surface of the Water 2:02
12 Memorize of "Aya and Eve" 1:37
13 Out of Phase 4:02
14 Urban Noise 1:52
15 Mystery Notes 1:02
16 Influence of Deep 3:04
17 Phrase of Aya 1:14
18 Phrase of Mitochondoria 0:42
19 Theme of Aya 1:34
20 Under the Progress 3:07
21 Plosive Attack 2:19
22 Missing Perspective 3:40
23 Memory II 1:09
24 Force Trail 1:42
25 Phrase of Eve 3:07
26 Memory III 1:14

Disc 2
01 Matrix 2:44
02 The Omission of the World 2:32
03 Wheel of Fortune 3:32
04 Kyrie 2:43
05 Across the View 1:52
06 Femmes Fatales 4:42
07 A Piece of Remain 1:20
08 Musica Mundana 2:14
09 U.B. 4:52
10 Escape of U.B. 0:25
11 Main Theme 1:49
12 Theme of Aya [Reprise] 1:14
13 I hear a voice calling me to awaken 1:55
14 Somnia Memorias 5:58
15 Consensus 1:56
16 Someone calls me...., Someone looks for me...... 1:47
17 Main Theme [Orchestral Version] 7:53
18 Influence of Deep -CM Version- 2:43
19 Se Il mio amore sta vincino -CM Version- 2:05

1. A.Y.A. - Theme of AYA Primary Mix / Remixed by Yoko Shimomura 5:10
2. Arise within You - Remixed by Toma / Remixed by Tomo for Xtra Music Productions 7:13
3. Plosive Attack - Cultivate Mix / Remixed by QUADRA for V3 Productions, Inc. 8:34
4. Missing Perspective - Dan K's Late Night Session / Remixed by Dan K for Soul Phonics Records, Inc. 6:43
5. Influence of Deep - DJ Hiraguri's Operattack / Remixed by Tribal Masters for BIG TIME PRODUCTIONS 8:13
6. Under the Progress - Something Wonderful Remix / Remixed by Kay Nakayama for CHILLSCAPE 6:36
7. Primal Eyes - We are All Parasites/Charlie Horse Mix / Remixed by Dummy Run 4:41
8. Across the Memories - DB Remix / Remixed by VAG40 4:57
9. Urban Noise - 112-80Mix / Remixed by Shigeo Tamaru 5:37
10. Somnia Memorias - Platinum Edition (English Version) / Re-Arranged by Keiichi Takahashi 5:56